Theoretical and experimental OD-stretch vibrational spectroscopy of heavy water.

In view of the current situation in which the OD-stretch vibrational spectra have been scarcely computed with non-polarizable rigid D2O models, we investigate the IR and Raman spectra of D2O by using a newly-reported model TIP4P/2005-HW. From the comparison between the calculations and experimental data, we find the excellent performance of TIP4P/2005-HW for vibrational spectroscopy of D2O in the same manner as TIP4P/2005 for H2O, although one may still conveniently employ an alternative method that regards OH as putative OD to calculate the OD-stretch spectra with similar quality from TIP4P/2005 trajectories. We also demonstrate that the appropriate setting for the spectral simulation of D2O under the time-averaging approximation reflects the slower dynamics (i.e., slower motion of translation and rotation due to the heavier mass and stronger hydrogen bond) of D2O than H2O. Moreover, we show from the theoretical calculations that the established interpretation of the OH-stretch spectra of H2O is finely applicable to the OD-stretch of D2O.

Diffusion of Multiple Species Resolved by Fluorescence Lifetime Recovery after Photobleaching (FLRAP).

Fluorescence recovery after photobleaching (FRAP) is now an indispensable tool to analyze the diffusion of molecules in vivo and in vitro. However, a conventional fluorescence intensity-based approach has difficulty in analyzing the diffusion of multiple species simultaneously. Here, we report fluorescence lifetime recovery after photobleaching (FLRAP) that incorporates fluorescence lifetime information into FRAP. By using FLRAP, the fluorescence intensity-recovery curves of each species can be successfully extracted from the ensemble photon data by utilizing their species-specific fluorescence decay curves, which are verified by applying FLRAP to two heterogeneous systems. Thus, FLRAP can be a powerful tool to quantitatively elucidate the molecular diffusion of multiple species in complex systems such as in living cells.

Peripheral adsorption of polylysine on one leaflet of a lipid bilayer reduces the lipid diffusion of both leaflets.

Understanding polycation-lipid interaction is essential not only in molecular biology but also in the biomedical industry and pharmacology. However, the effect of the polycation-lipid interaction on the molecular properties of lipids in biomembranes remains elusive. Here, two fluorescence correlation spectroscopies (FCSs), pulse-interleaved excitation (PIE) FCS and lifetime-based FCS, were performed to elucidate the change in the lipid diffusion of a model biomembrane induced by polylysine (PLL) adsorption. The results of PIE-FCS showed that the diffusions of both anionic and zwitterionic lipids become slower in the presence of PLL but the mobility of the anionic lipids is much reduced, suggesting the preferential interaction between the PLL and the anionic lipids due to the electrostatic attraction. Furthermore, leaflet-specific lipid diffusion analysis by lifetime-based FCS clearly showed that PLL adsorption on one leaflet of the membrane reduces the lipid diffusion of both leaflets in the same manner. This clearly indicates that the interleaflet coupling is strong in the presence of PLL.

Complex phase of the nonresonant background in sum frequency generation spectroscopy.

Sum frequency generation (SFG) spectroscopy is an interface-selective spectroscopic technique that enables us to selectively observe the vibrational or electronic resonances of molecules within a very thin interface layer. The interfacial properties probed by SFG are contained in a complex quantity called the second-order nonlinear susceptibility (χ2). It is usually believed that the imaginary part of χ2 (Im χ2) exhibits the resonant responses of the system, whereas the nonresonant responses appear solely in the real part of χ2 (Re χ2). However, it was recently theoretically pointed out that a portion of the nonresonant responses actually contributes to the observed Im χ2 spectra when the finite thickness of the interface layer is taken into account. In this study, by considering a simple air/liquid interface without any solutes as a model system, we theoretically evaluate the nonresonant contribution to experimentally accessible Im χ2 as well as to Re χ2, from which the complex phase of the nonresonant background is estimated. It is shown that the deviation of the complex phase from 0° or 180° is less than 1° even if the thickness of the interface layer is taken into account. This means that the nonresonant contribution to Im χ2 is practically negligible, and it is a very good approximation to think that the nonresonant background appears solely in Re χ2 in the case of air/liquid interfaces. This result implies that Im χ2 practically contains only the resonant responses of the system, and molecular resonances at the interface can be conveniently studied using Im χ2 spectra at such interfaces.

Appraisal of TIP4P-type models at water surface.

In view of the current situation in which non-polarizable rigid water models have been scarcely examined against surface-specific properties, we appraise TIP4P-type models at the liquid water surface on the basis of heterodyne-detected sum frequency generation (HD-SFG) spectroscopy. We find in the HD-SFG spectrum of the water surface that the peak frequency of the hydrogen-bonded OH band, the half width at half maximum of the hydrogen-bonded OH band, and the full width at half maximum of the free OH band are best reproduced by TIP4P, TIP4P/Ew, and TIP4P/Ice, respectively, whereas it is already well known that TIP4P/2005 best reproduces the surface tension. These TIP4P-type models perform better at the water surface in terms of the present appraisal items than some polarizable models in the literature.

Local pH at Nonionic and Zwitterionic Lipid/Water Interfaces Revealed by Heterodyne-Detected Electronic Sum-Frequency Generation: A Unified View to Predict Interfacial pH of Biomembranes.

For biomembranes, which are composed of neutral as well as charged lipids, the local pH at lipid/water interfaces is extremely important in their structural formation and functional activity. In our previous study of the charged lipid/water interfaces, we found that the local pH at the interface is governed by the positive or negative sign of the charge of the lipid: i.e., the local pH is dictated by the repulsive or attractive electrostatic interaction between the charged lipid headgroup and the proton. Because of the lack of net charge in the headgroup of the neutral lipid, the factor determining the local pH at neutral lipid/water interfaces is less straightforward, and therefore it is more challenging to predict the local pH. Here we apply heterodyne-detected electronic sum frequency generation (HD-ESFG) spectroscopy to nonionic and zwitterionic lipids to investigate the local pH at the neutral lipid/water interfaces. The obtained results indicate that the local pH at the nonionic lipid/water interface is higher than in bulk water by 0.8 whereas the local pH at the zwitterionic lipid/water interface is lower by 0.6, although the latter is subject to significant uncertainty. The present HD-ESFG study on neutral lipids, combined with the previous study on charged lipids, presents a unified view to consider the local pH at biomembranes based on the balance between the electrostatic interaction and the hydrophobicity provided by the lipid.

Transferability of vibrational spectroscopic map from TIP4P to TIP4P-like water models.

We computed the IR, Raman, and sum frequency generation spectra of water in the OH-stretch region by employing the quantum/classical mixed approach that consists of a vibrational spectroscopic map and molecular dynamics (MD) simulation. We carried out the MD simulation with the TIP4P, TIP4P/2005, and TIP4P/Ice models and applied the map designed for TIP4P by Skinner et al. to each MD trajectory. Although the map is not tuned for TIP4P-like models, TIP4P/2005 and TIP4P/Ice provide the best reproduction of the experimental vibrational spectra of liquid water and crystalline ice, respectively. This result demonstrates the transferability of the map from TIP4P to TIP4P/2005 and TIP4P/Ice, meaning that one can choose an appropriate TIP4P-like model to calculate the vibrational spectra of an aqueous system without rebuilding the map.

Experimental and Theoretical Heterodyne-Detected Sum Frequency Generation Spectroscopy of Isotopically Pure and Diluted Water Surfaces.

The χ(2) (second-order nonlinear optical susceptibility) spectrum of the water surface has been a matter of debate for a few decades. Here, we report that we experimentally measured the isotopic dilution dependence of the χ(2) spectrum and theoretically reproduced it by employing the quantum/classical mixed approach with a new idea to subtract an artifact. The present theoretical framework allows for clarifying the effects of the intramolecular, intermolecular, and Fermi resonance couplings on the OH-stretch vibrational spectra of water at the surface as well as in the bulk.

DNA-Induced Reorganization of Water at Model Membrane Interfaces Investigated by Heterodyne-Detected Vibrational Sum Frequency Generation Spectroscopy.

Lipid-DNA complexes are important nonviral vectors to be used in gene therapy, which is one of the promising strategies for the cure of many diseases. Although interfacial water is expected to play a significant role in lipid-DNA complexation, a molecular-level understanding about the role of interfacial water in the DNA-lipid complexation is still sparse. In this study, the structure and orientation of water at cationic and zwitterionic lipid monolayer/water interfaces in the presence of DNA are studied by the use of interface-selective heterodyne-detected vibrational sum frequency generation (HD-VSFG) spectroscopy. It is found that the adsorption of DNA at a cationic lipid interface drastically decreases the orientation of interfacial water reflecting the neutralization of the positively charged interface, whereas the adsorption of DNA at a zwitterionic lipid interface makes interfacial water become more "H-up", indicating that the originally zwitterionic interface becomes negatively charged due to the DNA adsorption. Furthermore, interfacial water having relatively strong hydrogen bonds is observed at both the cationic and zwitterionic lipid interfaces in the presence of DNA.

Progress in phase-sensitive sum frequency generation spectroscopy.

Sum frequency generation (SFG) spectroscopy is a unique and powerful tool for investigating surfaces and interfaces at the molecular level. Phase-sensitive SFG (PS-SFG) is an upgraded technique that can overcome the inherent drawbacks of conventional SFG. Here we review several methods of PS-SFG developed and reported in 1990-2020. We introduce how and by which group each PS-SFG method was designed and built in terms of interferometer implementation for optical heterodyne detection, with one exception of a recent numerical method that does not rely on interferometry. We also discuss how PS-SFG solved some typical problems for aqueous interfaces that were once left open by conventional SFG. These problems and their solutions are good examples to demonstrate why PS-SFG is essential. In addition, we briefly note a few terminology issues related with PS-SFG to avoid confusion.

Resolving the Controversy over Dipole versus Quadrupole Mechanism of Bend Vibration of Water in Vibrational Sum Frequency Generation Spectra.

Recently, there has been controversy over whether the HOH bend signal of water in the vibrational sum frequency generation (VSFG) spectrum arises from the conventional dipole mechanism or the quadrupole mechanism. Here, we show that the Im χ(2) (the imaginary part of the second-order nonlinear susceptibility) spectra of the HOH bend mode of water at oppositely charged monolayer/water interfaces all exhibit positive bands, irrespective of the difference in the sign of the charge at the interface. Furthermore, it is found that the peak frequency of the HOH bend band substantially changes depending on the chemical structure of the charged headgroup located at the interface. These results demonstrate that the VSFG signal of the HOH bend vibration is generated from interfacial water with the interfacial quadrupole mechanism that is associated with the large field gradient of incident lights localized in a very thin region at the interface.

Structure of water and polymer at the buried polymer/water interface unveiled using heterodyne-detected vibrational sum frequency generation.

The structure of the prototypical acrylic polymer (poly(methyl methacrylate): PMMA)/water interface is elucidated at the molecular level using heterodyne-detected sum-frequency generation. Two distinct OH groups of interfacial water are found at the interface: one forms hydrogen bonds with the carbonyl group and the other weakly interacts with the ester methyl group of the polymer surface.

Hydrogen order at the surface of ice Ih revealed by vibrational spectroscopy.

Among numerous crystalline phases of ice, the Ih phase is the most stable above 72 K at atmospheric pressure. It is well established that the orientations of water molecules in the bulk of ice Ih are statistical without long-range order. However, the orientational order of water at the surface of ice Ih has been enigmatic. Here we show that the surface of ice Ih at 100 K has hydrogen order with the OH group pointing upward to the air ("H-up" orientation). We applied nonlinear optical spectroscopy and theoretical modeling to the surface of isotopically pure and diluted ice Ih and observed OH stretch vibrational signatures attributed to H-up ordering. Furthermore, we found that this hydrogen order takes place despite a more inhomogeneous microenvironment at the surface than in the bulk. Our results suggest the prominent role of the surface to allow the reorientation of water molecules for hydrogen ordering that is virtually prohibited in the bulk.

Effect of electrostatic interaction on the leaflet-specific diffusion in a supported lipid bilayer revealed by fluorescence lifetime correlation analysis.

A supported lipid bilayer (SLB) is now an indispensable tool to analyze the dynamical properties of biomembranes. However, the effect of a solid support on the leaflet-specific lipid dynamics in a SLB remains elusive, which hampers the further application of the SLB as a model biomembrane. Here, we performed the leaflet-specific lipid diffusion analysis by means of two-dimensional fluorescence lifetime correlation spectroscopy to elucidate the effect of the electrostatic interaction between lipid headgroups and a glass surface on the lipid diffusion in each leaflet of the SLB. The results clearly showed the correlation between the strength of the electrostatic interaction and the lipid diffusion in the proximal leaflet of the SLB facing a glass surface. In particular, the electrostatic attraction between the cationic lipids and a negatively charged glass surface enhanced the lipid diffusion in the proximal leaflet of the SLB, providing important implications for the lipid dynamics not only in the SLB but also in biomembranes.

Reduction of glass-surface charge density slows the lipid diffusion in the proximal leaflet of a supported lipid bilayer.

Understanding the effect of a solid support on the dynamical properties of a supported lipid bilayer (SLB) is a prerequisite for the applications of SLB as a model biomembrane. Here, we applied two-dimensional fluorescence lifetime correlation spectroscopy to examine the effect of solution pH on the diffusion of lipids in the proximal/distal leaflets of a zwitterionic SLB. Leaflet-specific diffusion analyses at various pH revealed that the diffusion of lipids in the proximal leaflet facing a glass surface becomes slower by decreasing pH with the transition pH of ∼7.4. We attributed it to the reduction of the surface charge density of a glass support. Furthermore, the data clearly showed that the lipid diffusion in the distal leaflet facing a bulk solution is insensitive to the change in the diffusion property of the proximal leaflet. This reflects a weak interleaflet coupling between the proximal and distal leaflets of the SLB.

Two-Dimensional Fluorescence Lifetime Correlation Spectroscopy: Concepts and Applications.

We review the basic concepts and recent applications of two-dimensional fluorescence lifetime correlation spectroscopy (2D FLCS), which is the extension of fluorescence correlation spectroscopy (FCS) to analyze the correlation of fluorescence lifetime in addition to fluorescence intensity. Fluorescence lifetime is sensitive to the microenvironment and can be a "molecular ruler" when combined with FRET. Utilization of fluorescence lifetime in 2D FLCS thus enables us to quantify the inhomogeneity of the system and the interconversion dynamics among different species with a higher time resolution than other single-molecule techniques. Recent applications of 2D FLCS to various biological systems demonstrate that 2D FLCS is a unique and promising tool to quantitatively analyze the microsecond conformational dynamics of macromolecules at the single-molecule level.

Quantifying the Diffusion of Lipids in the Proximal/Distal Leaflets of a Supported Lipid Bilayer by Two-Dimensional Fluorescence Lifetime Correlation Spectroscopy.

A supported lipid bilayer (SLB) is a versatile platform for examining the dynamical properties of biomembranes. However, the effect of a prerequisite solid substrate on the dynamics of a SLB remains very elusive. Especially, it is not clarified how the diffusivity of each leaflet in a SLB is affected by the SLB-solid substrate interaction. In this study, we applied two-dimensional fluorescence lifetime correlation spectroscopy to a SLB for elucidating the diffusion of lipids in the proximal and distal leaflets of a SLB. We find that the autocorrelation curve of a fluorescent lipid in the proximal leaflet decays more slowly than that in the distal leaflet, meaning that the proximal leaflet is less diffusive. This result indicates stronger interaction between the proximal leaflet and a solid substrate.

Total Internal Reflection Two-Dimensional Fluorescence Lifetime Correlation Spectroscopy.

Fluorescence lifetime correlation analysis is becoming a powerful tool to understand the conformational heterogeneity of biomolecules and their dynamics with an unprecedented detection sensitivity and time resolution. However, its application to the study of biomembranes is very limited. Here, we report on two-dimensional fluorescence lifetime correlation spectroscopy (2D FLCS) in combination with total internal reflection (TIR) microscopy (TIR 2D-FLCS). High depth resolution in TIR microscopy and species-specific correlation analysis in 2D FLCS give us the opportunity to selectively analyze molecules in or on a supported lipid bilayer, a model biomembrane formed on the glass surface. Feasibility experiments performed in this study clearly demonstrated that TIR 2D-FLCS has a potential to selectively analyze the diffusion and the conformational dynamics of proteins peripherally bound on the membrane in the presence of substantial amounts of unbound molecules in the bulk phase.

Two-Photon Infrared Resonance Can Enhance Coherent Raman Scattering.

In this Letter we present a new technique for attaining efficient low-background coherent Raman scattering where the Raman coherence is mediated by a tunable infrared laser in two-photon resonance with a chosen vibrational transition. In addition to the traditional benefits of conventional coherent Raman schemes, this approach offers a number of advantages including potentially higher emission intensity, reduction of nonresonant four-wave mixing background, preferential excitation of the anti-Stokes field, and simplified phase matching conditions. In particular, this is demonstrated in gaseous methane along the ν_{1} (A_{1}) and ν_{3} (T_{2}) vibrational levels using an infrared field tuned between 1400 and 1600 cm^{-1} and a 532-nm pump field. This approach has broad applications, from coherent light generation to spectroscopic remote sensing and chemically specific imaging in microscopy.